sliding-window analysis tool simplot v3.5.1 Search Results


simplot v3 5 1  (Simplot Science)
86
Simplot Science simplot v3 5 1
Simplot V3 5 1, supplied by Simplot Science, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sliding-window+analysis+tool+simplot+v3%2E5%2E1/pm41498111-100-16-16?v=Simplot+Science
Average 86 stars, based on 1 article reviews
simplot v3 5 1 - by Bioz Stars, 2026-08
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simplot program v3 5 1  (Simplot Science)
86
Simplot Science simplot program v3 5 1
Simplot Program V3 5 1, supplied by Simplot Science, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sliding-window+analysis+tool+simplot+v3%2E5%2E1/10__15212_slash_zoonoses___2025___0055-44-8-8?v=Simplot+Science
Average 86 stars, based on 1 article reviews
simplot program v3 5 1 - by Bioz Stars, 2026-08
86/100 stars
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sliding window analysis  (Simplot Science)
86
Simplot Science sliding window analysis
Sliding Window Analysis, supplied by Simplot Science, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sliding-window+analysis+tool+simplot+v3%2E5%2E1/pmc12766897-126-6-16?v=Simplot+Science
Average 86 stars, based on 1 article reviews
sliding window analysis - by Bioz Stars, 2026-08
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recombination events  (Simplot Science)
86
Simplot Science recombination events
Recombination Events, supplied by Simplot Science, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 86 stars, based on 1 article reviews
recombination events - by Bioz Stars, 2026-08
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bootscan analysis  (Simplot Science)
86
Simplot Science bootscan analysis
Analysis of the BJ-HKU31 spike (S) protein. ( A ) Detection of a possible recombination event was conducted using <t>bootscan</t> analysis. A whole genome sequence similarity plot was performed using Simplot (v3.5.1), with a window size of 1000 bp and a step size of 200 bp. A bat coronavirus (GenBank accession no. KC869678 ) served as the query sequence and was compared against other coronaviruses, including Ea -HedCoV HKU31 (red, this study), BtVs-BetaCoV/SC2013 (green), and bat coronavirus HKU4 (yellow). ( B ) Amino acid sequence alignments of receptor-binding domain (RBD) sequences of hedgehog coronaviruses. The sequence of MERS-CoV (GenBank accession no. NC_019843 ) was used as the reference sequence. Different colors are used to highlight distinct residues, red asterisks mark conserved residues (functionally critical in MERS-CoV).
Bootscan Analysis, supplied by Simplot Science, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sliding-window+analysis+tool+simplot+v3%2E5%2E1/pmc12843918-63-15-20?v=Simplot+Science
Average 86 stars, based on 1 article reviews
bootscan analysis - by Bioz Stars, 2026-08
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Image Search Results


Analysis of the BJ-HKU31 spike (S) protein. ( A ) Detection of a possible recombination event was conducted using bootscan analysis. A whole genome sequence similarity plot was performed using Simplot (v3.5.1), with a window size of 1000 bp and a step size of 200 bp. A bat coronavirus (GenBank accession no. KC869678 ) served as the query sequence and was compared against other coronaviruses, including Ea -HedCoV HKU31 (red, this study), BtVs-BetaCoV/SC2013 (green), and bat coronavirus HKU4 (yellow). ( B ) Amino acid sequence alignments of receptor-binding domain (RBD) sequences of hedgehog coronaviruses. The sequence of MERS-CoV (GenBank accession no. NC_019843 ) was used as the reference sequence. Different colors are used to highlight distinct residues, red asterisks mark conserved residues (functionally critical in MERS-CoV).

Journal: Microorganisms

Article Title: Phylogenetic Characteristics and High Prevalence of a Merbecovirus in Hedgehogs from Greenspace of a Metropolis, China

doi: 10.3390/microorganisms14010083

Figure Lengend Snippet: Analysis of the BJ-HKU31 spike (S) protein. ( A ) Detection of a possible recombination event was conducted using bootscan analysis. A whole genome sequence similarity plot was performed using Simplot (v3.5.1), with a window size of 1000 bp and a step size of 200 bp. A bat coronavirus (GenBank accession no. KC869678 ) served as the query sequence and was compared against other coronaviruses, including Ea -HedCoV HKU31 (red, this study), BtVs-BetaCoV/SC2013 (green), and bat coronavirus HKU4 (yellow). ( B ) Amino acid sequence alignments of receptor-binding domain (RBD) sequences of hedgehog coronaviruses. The sequence of MERS-CoV (GenBank accession no. NC_019843 ) was used as the reference sequence. Different colors are used to highlight distinct residues, red asterisks mark conserved residues (functionally critical in MERS-CoV).

Article Snippet: To assess potential recombination events in the genomes of hedgehog CoVs identified in this study, Bootscan analysis was performed using SimPlot (v3.5.1; SCRoftware, Johns Hopkins University School of Medicine, Baltimore, MD, USA) with a 1000 bp sliding window and 200 bp step size, based on the Kimura two-parameter model and the Neighbor-Joining method.

Techniques: Sequencing, Binding Assay